PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.124550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 473aa    MW: 53941.4 Da    PI: 7.2265
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.124550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.7e-10356403448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd+++++G+g+W+ I +++     +Rt+ +++++w+++l
   Cucsa.124550.1 356 WTLTEVMRLVDGIAEYGTGRWTHIKKHLFassPHRTPIDLRDKWRNLL 403
                      ****************************99****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.175347407IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-13347405IPR009057Homeodomain-like
SuperFamilySSF466897.33E-16350422IPR009057Homeodomain-like
SMARTSM007171.3E-9352405IPR001005SANT/Myb domain
CDDcd116601.99E-17354404No hitNo description
PfamPF002494.3E-8355403IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MDQEVHFCQK FTNMKSHWVK VERPFLPTPL NDSNEVEDLL VESKSEHVLG SCLRVQDFSC  60
DFGYGIQTNG GGLDSNSKQG GEHELKFGDL DQLLDDANEV GEFHATNNLP NTYAEVAENS  120
FRQNRGFQLE NSSSERESQG PSRIDTDAFG ISELSATMVM EAEFSNTPVE RGLTHELSPG  180
LGTKGRCVTP LEGNICGTIL DNRNIHKFNT NENYIENGDL SDENVKGDIV ANELASCSRE  240
RRLRKPTRRY IEELLDSKSE HNKGRRKLPR KDKYLKVMST EESNHIRHEV QMTPRSDSQC  300
GTSVPVQPKS ERRHPKKHVP DSEFLSEDEL SATECKNVYS SAKRCKKYDR RRQKMWTLTE  360
VMRLVDGIAE YGTGRWTHIK KHLFASSPHR TPIDLRDKWR NLLRASCVNI QNKKGIEGKQ  420
THASRPLPKS LLQRVYELAN IYPYPKERDE GEISINLKYS SPISIVTNVY FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-12338435290Telomere binding protein TBP1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239245ERRLRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818870.0LN681887.1 Cucumis melo genomic scaffold, anchoredscaffold01600.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011657653.10.0PREDICTED: uncharacterized protein LOC101219571 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.22e-21TRF-like 6